That's my best guess.
Good luck Bruce
On Aug 28, 2012, at 11:07 PM, Hugh Pemberton hughpemberton1@gmail.com wrote:
Yeah had 4/5 other processes going together, shall I just sort memory and re-do? Thanks for such a speedy response! Hugh
On 29 Aug 2012, at 12:35, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Looks like the careg died, probably because you ran out of memory. Was anything else running on the machine?
On Aug 28, 2012, at 10:17 PM, Hugh Pemberton hughpemberton1@gmail.com wrote:
Hi Freesurfers,
Have had this error come up after recon-all for a number of subjects and was wondering if you know what the issue is..? I have attached the recon-all.log too FYI.
INFO: assuming .mgz format $Id: mris_fix_topology.c,v 1.48 2011/03/02 00:04:32 nicks Exp $ $Id: mrisurf.c,v 1.693.2.2 2011/04/27 19:21:05 nicks Exp $ MRISread(/home/hughp/freesurfer/subjects/FAC/surf/lh.qsphere.nofix): could not open file reading input surface /home/hughp/freesurfer/subjects/FAC/surf/lh.qsphere.nofix... No such file or directory mris_fix_topology: could not read input surface /home/hughp/freesurfer/subjects/FAC/surf/lh.qsphere.nofix No such file or directory
As the error suggests cannot read lh.qsphere, there is indeed nothing at all in the surf folder. Thanks for all your help, Hugh <recon-all.error> <recon-all.log> _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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