Hi Mads
what does it look like if you move off the mideline? Or check a coronal view? Sagittal views of the midline are notoriously bad for judging skull stripping accuracy
cheers Bruce On Tue, 19 Aug 2014, Mads Jensen wrote:
Dear list,
I have problem with the brainmask from a subject where there is removed to much of the gray matter. So, I would like to hear if someone has a good idea where I should start to fix this issue?
I have attached a jpgs of the brainmask and orig, and a link to the recon-all.log
best regards, mads