Hi all, I have a problem with freeview and I am not sure about the command line to be used to view a mask. I have created an annot file and I would like to have a picture of the mask in the inflated brain with curvature. However when I use the annot file with tksurfer I am able to do so, but with freeview the brain become all black (not in the mask) when the annot file is used. I have read the freeview manual, but I did not fond help in using freeview with command line. Where can I find some help?
the command with tksurfer was:
tksurfer fsaverage lh inflated -curv -gray -annot mymask.annot
with freeview I tried this:
freeview -f fsaverage/surf/lh.inflated:overlay=lh.curv:overlay_threshold=2,5 :annot=mymask.annot -viewport 3d
thank you for any help!
Angela