I'm not sure what you mean. Do you mean that when you looked at a single slice of the dicom, the top of the slice was posterior and the bottom was anterior. Then when you look at a slice of the analyze, top of the slice was anterior and the bottom was posterior? mri_convert will not do this, so I suspect that your visualization program is flipping things around.
Joongnam Yang wrote:
Thanks Doug,
When I used mri_convert to convert *.dcm to *.hdr, the resulting *.hdr has anterior and posterior reversed. The top was posterior and the bottom was anterior. Is there any way to change, so that the top is anterior and the bottom is posterior?
Nam.
Doug Greve greve@nmr.mgh.harvard.edu 04/28/05 6:09 PM >>>
It will transform all of them that belong to the same series into one file. If they don't all belong to the same series, then you're on your own.
doug
Joongnam Yang wrote:
Thanks Doug,
Is there a way of transforming all the *.dcm files into one-volume {img,hdr,mat} file?
Nam.
Doug Greve greve@nmr.mgh.harvard.edu 04/28/05 2:56 PM >>>
Try
mri_convert file.dcm f -ot spm
where file.dcm is a dicom file in the series you want to convert (there is no special naming requirements -- in fact the file names can be random). The output will be
f001.{img,hdr,mat} f002.{img,hdr,mat}
doug
Joongnam Yang wrote:
Hi all,
I am sorry, since I might have missed the answer. My question is, the following question by Mr. Ajay Pillai has been
answered?
If yes, would someone forward me the answer please?
Thanks. Nam.
Ajay Pillai pillai@ccs.fau.edu 04/27/05 2:26 PM >>>
Hi, I am trying to convert my dicom funcional scan images into SPM analyze (or even AFNI BRIK) format.
I have about 320 functional volumes of 30 slices each. So basically I have 9600 .dcm files which I have renamed sequentially for each subject.The first 30 constitute one volume the next 30 next volume and so on.
Can mri_convert do this? If so could some one please tell me how?
Thank you
Ajay
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-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422