[Freesurfer] Error with recon-all

Hi,

I'm using the version of recon-all that Nick provided at April 17 to be able to run nu_correct prior to the Talairach stage. (I'm on a Mac, OSX 10.6, version v5.1.0). The command given was

recon-all -autorecon-all -hippo-subfileds -no-wsgcaatlas \ -clean-tal -s subject.

recon-all stopped and issued the following error:

cp: ../surf/lh.orig_corrected: No such file or directory.

Note that I included the option -no-wsgcaatlas to get a better skullstripping because in the default mode the skulltripping was bad. With this option it looks good. I got the above error regularly for other subjects as well and by including the -no-wsgcaatlas option recon-all finished without error, except for the present case.

Cheers, Ed