Re: [Freesurfer] Deflate surface

On 03/04/2016 10:50 PM, marmaduke woodman wrote:

On 03/04/2016 10:19 PM, Bruce Fischl wrote:

...

I think you can map it to fsaverage5 then use mri_surf2surf with -sval-xyz to map the fsaverage5 surface back to each subject

Sorry for the noise, fwiw, this seems to do the trick:

mri_surf2surf --srcsubject tvb --trgsubject fsaverage5 --hemi lh --sval-xyz pial --tval pial.tvb --tval-xyz tvb/mri/T1.mgz

produces the 10k vertex surface in fsaverage5/surf/lh.pial.tvb, and

mri_surf2surf --srcsubject tvb --trgsubject fsaverage5 --hemi lh --sval-annot tvb/label/lh.aparc.annot --tval ./tvb-annot-on-fsaverage5.annot

produces a corresponding annotation.

thanks for your help! Marmaduke