[Freesurfer] Problems with intensity/final volumes/wm segm?

Inês Souta

18 Jun 2007 18 Jun '07

10:26 a.m.

Hi,

After running -autorecon2, I checked the output images and I found that either the intensity normalization or the wm segmentation was not done well. I don't really know what to do or where to start. I've already tried adding some control points and editing wm.mgz, but it doens't seem to improve much. What should I do?

I send some of the images in atachment,

Thanks,

Ines

Attachments:

attachment.html (text/html — 422 bytes)
Brainmask_sagital.JPG (image/jpeg — 20.7 KB)
Brainmask_coronal.JPG (image/jpeg — 30.4 KB)
Brainmask_horizontal.JPG (image/jpeg — 23.9 KB)

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