External Email - Use Caution
That's super.
Thanks again Eugenio,
Best regards
Erik
________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Iglesias Gonzalez, Eugenio e.iglesias@ucl.ac.uk Sent: 11 September 2018 16:44:34 To: Freesurfer support list; Freesurfer support list Subject: Re: [Freesurfer] Using the new Thalamus tool
External Email - Use Caution
10-15 mins or so
Sent from my phone, please excuse brevity and typos
________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Erik O'Hanlon erikohanlon@rcsi.ie Sent: Tuesday, September 11, 2018 12:32:23 PM To: Freesurfer support list Subject: Re: [Freesurfer] Using the new Thalamus tool
External Email - Use Caution
Thanks Eugenio,
I'll intall the latest dev version so. How long does it typically take to run a subject through the thalamus pipeline typically?
Thanks again for the prompt reply. Very much appreciated.
Cheers
Erik
________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Iglesias Gonzalez, Eugenio e.iglesias@ucl.ac.uk Sent: 10 September 2018 18:00:20 To: freesurfer@nmr.mgh.harvard.edu; Freesurfer support list Subject: Re: [Freesurfer] Using the new Thalamus tool
External Email - Use Caution
Dear Erik, Installing only the thalamic tool is technically possible but requires a level of hacking that i don't want to encourage or support ;-) Please install the new dev on a separate directory, and make FREESURFER_HOME point to that the directory (and source freesurfer) to run the thalamic tool. No need to rerun recon-all on the subjects. Cheers Eugenio
Sent from my phone, please excuse brevity and typos
________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Erik O'Hanlon erikohanlon@rcsi.ie Sent: Thursday, September 6, 2018 3:44:57 PM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Using the new Thalamus tool
External Email - Use Caution
Hi FS Experts
I've run my data through the brainstem, hippocampus and amygdala following the usual Recon_all and using the developmental version downloaded and stalled around Jan2018. I'd like to use the new thalamus tool and am wondering if I need to do a full install of the latest DEV version to do so. As I am still working on certain aspects of the analyses I've run so far, I don't want to overwrite my main FS installation mid analysis. Is it possible to download the toolbox and add it to my current dev version or is it best just to do another install with teh complete new Dev version? Is it possible to run the Thalamus analysis as an addtional component without having to rerun the recon_all again?
Thanks and regards
Erik
Erik O'Hanlon Postdoctoral researcher
[cid:rcsi-crest-signature_f581c185-1d03-45c8-a786-23d8ece3d391.png]
RCSI Psychiatry Royal College of Surgeons in Ireland Beaumont Road, Beaumont D9 Ireland T: 8093740 E: erikohanlon@rcsi.ie W: www.rcsi.comhttp://www.rcsi.com/
Transforming Healthcare Education, Research and Service: RCSI Strategic Plan 2018-2022http://www.rcsi.ie/strategy2018
[cid:both3_b9da8717-e91f-4ea7-8729-dc2c4d0a7a5f.png]
Erik O'Hanlon Postdoctoral researcher
[cid:rcsi-crest-signature_f581c185-1d03-45c8-a786-23d8ece3d391.png]
RCSI Psychiatry Royal College of Surgeons in Ireland Beaumont Road, Beaumont D9 Ireland T: 8093740 E: erikohanlon@rcsi.ie W: www.rcsi.comhttp://www.rcsi.com/
Transforming Healthcare Education, Research and Service: RCSI Strategic Plan 2018-2022http://www.rcsi.ie/strategy2018
[cid:both3_b9da8717-e91f-4ea7-8729-dc2c4d0a7a5f.png]
Erik O'Hanlon Postdoctoral researcher
[cid:rcsi-crest-signature_f581c185-1d03-45c8-a786-23d8ece3d391.png]
RCSI Psychiatry Royal College of Surgeons in Ireland Beaumont Road, Beaumont D9 Ireland T: 8093740 E: erikohanlon@rcsi.ie W: www.rcsi.comhttp://www.rcsi.com/
Transforming Healthcare Education, Research and Service: RCSI Strategic Plan 2018-2022http://www.rcsi.ie/strategy2018
[cid:both3_b9da8717-e91f-4ea7-8729-dc2c4d0a7a5f.png]
