Hi all,
After attempting recon-all I received the error "mritotal failed, see transforms/talairach.log" etc which I understand may have something to do with bad output from registration. I've checked orig.mgz which does look out of line - the orientation is off so that it appears the subject has their head tilted off to one side (see Image1.jpg).
I have tried to fix this manually with the help of this tutorial:
http://freesurfer.net/fswiki/FsTutorial/Talairach_freeview
Hovever, the "movable" blurry image that I'm trying to line up with my subjects image does not match the coronal, sagittal or horizontal views, e.g. when I click "coronal" my subject is displayed correctly but the movable image is displayed horizontally (see Image2.jpg and Image3.jpg).
Am I missing something obvious? (and am I even on the right track given this error?)
Thanks in advance for any help.
Cheers, Will
