I'm still not sure what you are trying to do. If you are running vbm, you can usually get the T1 sampled in the MNI space for all subjects. You can average them together and run the average through recon-all
On 3/12/19 11:44 AM, Laboratorio de Neurociencia Funcional wrote:
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Hi Bruce,
what I really need is to obtain several labels that are only included in the aparc+aseg, not for each subject but for the entire sample. My goal is to use these labels (ROIs) in VBM analysis after they are trasformed to volume and further registered to MNI. To this aim, I though to obtain first the fsaverage subject from my sample, run the recon-all in that fsaverage, and finally obtain the labels of interest. Is there another way to proceed with this?
Thank you in advance.
Best, Jose
El mar., 12 mar. 2019 a las 14:55, Bruce Fischl (<fischl@nmr.mgh.harvard.edu mailto:fischl@nmr.mgh.harvard.edu>) escribió:
Hi Jose can you clarify what you mean by "...to get all the labels that are obtained in each individual subject." You almost certainly don't need to recon fsaverage to do this, but I'm not sure exactly what you mean cheers Bruce On Tue, 12 Mar 2019, Laboratorio de Neurociencia Funcional wrote: > > External Email - Use Caution > > Dear Freesurfers, > > I would like to apply recon-all to the fsaverage subject of my sample to get all the labels that are > obtained in each individual subject. However, it is not possible because my average subject doesn't > contain the file /orig/001.mgz required to run the recon-all. Could you help me to handle this > issue? > > Many thanks in advance. > > Best regards, > Jose > >_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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