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Dear Chenfei,
To successfully use the 'recon-all -qcache' command you listed, you would need to have the fsaverage4 subject in your $SUBJECTS_DIR. Did you copy it there before running the command? You can find it in $FREESURFER_HOME/subjects/fsaverage4.
Best,
Tim
On March 2, 2019 at 2:57 PM Chenfei YE chenfei.ye@foxmail.com wrote:
External Email - Use CautionHi,
I'm following the process described in https://www.cloudneuro.org/ to predict age based on cortical thickness of an individual brain. I cannot map surface to the fsaverage4 template by the 2nd command: recon-all -s subject.id -qcache -target fsaverage4The error was shown like mri_surf2surf: could not read surface ./test2/surf/lh.fsaverage4.sphere.regNo such file or directory
I tried to change the 1st command like: recon-all -i input_image -s subject.id -all -target fsavearge4But still the same error.
My FreeSurfer version is 6.0.0. Maybe that's why I cannot successfully run the code in https://www.cloudneuro.org/. But is there any way to solve this problem? Thank you.
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