Dear. Freesurfer experts.
Hi. How are you?
I'm trying to flatten the visual cortex using the command mris_flatten (freesurfer version 5.3.0).
The command line is: mris_flatten -w 0 -distances 12 7 $SUBJECTS_DIR/$SUBJECT/surf/lh.oc.patch.3d $SUBJECTS_DIR/$SUBJECT/surf/lh.oc.patch.flat
The error I get is: using write iterations = 0 sampling 7 neighbors out to a distance of 12 mm reading patch /home/jbang/Projects/replay/mri//replay06/surf/rh.oc.patch.3d with 27964 vertices (19.0% of total) MRISreadPatch: bad vertex # (147220) found in patch file No such file or directory
Previously, Bruce advised me to recut it, so I deleted the lh.oc.patch.3d and recut it. However, freesurfer gives me the same error message...
Could you please help me fix it?
Thank you so much.
Best, Ji Won