there's nothing in the directory (ie, /space/seymour/1/users/folate_subjects/FB110059A ) Dave Brohawn wrote:
Hello,
I am having issues with SPM Register-Sess and I am not sure why. The command I am entering and the response I receive are
spmregister-sess -s FB11059A
spmregister-sess logfile is /autofs/space/seymour_001/users/folate_subjects/log/spmregister-sess.11485.log
Session: /autofs/space/seymour_001/users/folate_subjects/FB11059A
Fri Feb 6 11:43:07 EST 2009 Detected format at nii Log file is /autofs/space/seymour_001/users/folate_subjects/FB11059A/bold/011/spmregister.log Fri Feb 6 11:43:07 EST 2009 --s FB110059A --mov /autofs/space/seymour_001/users/folate_subjects/FB11059A/bold/011/f.nii --reg bold/register.dat --fsvol brainmask $Id: spmregister,v 1.21.2.3 2008/07/07 13:53:49 greve Exp $ matlab matlab ERROR: /space/seymour/1/users/folate_subjects/FB110059A/mri/brainmask.mgz not found in either COR or MGZ formats ERROR: spmregister failed
The pre-proc command worked, and brainmask construction was completed successfully. In fact, I can go into this subjects mri folder, and see the brainmask.mgz file.
Here is the bugr information:
FREESURFER_HOME: /usr/local/freesurfer/stable4
Build stamp: freesurfer-Linux-centos4-stable-v4.2.0-20090203
RedHat release: CentOS release 4.6 (Final)
Kernel info: Linux 2.6.9-67.ELsmp i686
NMR Center info (/space/freesurfer exists):
machine: seymour
SUBJECTS_DIR: /space/seymour/1/users/folate_subjects
PWD: /space/seymour/1/users/folate_subjects
Thank you,
Dave Brohawn
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer