phew. Then you should be able to copy those over to your new runs if you want (that is, copy all the 1s and 255s into the volumes in the new directories). I assume you are rerunning recon-all from scratch? Or you could just copy the whole directory, and rerun recon-all -all on the new directory and it should recreate everything while preserving edits
cheers Bruce
On Mon, 28 Jul 2014, Jason Tourville wrote:
Hi Bruce,Used v5.3 for original edits using the "recon" mode in freeview so edits used 1 for "off" and 255 for "on".
Jason
On Mon, Jul 28, 2014 at 9:22 AM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: Hi Jason
what version? Did it support recon mode? The edits need to use 1 for "off" and 255 for "on", otherwise we can't track them. cheers Bruce On Mon, 28 Jul 2014, Jason Tourville wrote: Hi Bruce,I used Freeview to edit the brainmask.mgz, wm.mgz, and brain.finalsurfs.manedit.mgz volumes. Cheers, Jason On Fri, Jul 25, 2014 at 9:23 PM, Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote: Hi Jason. How were the edits done? Cheers Bruce > On Jul 25, 2014, at 10:40 AM, Jason Tourville <jaytour@gmail.com> wrote: > > Hi there, > We have performed manual volume edits on a number of scans. Recently, we ran those scans through recon-all with a new Tal volume target. The seg and surfaces are improved using the new target but most of the manual edits performed on the earlier version would improve the surfaces. Is there an established means for porting the manually edited voxel values to the volumes of the new re-con? > > Thanks, > Jason > > > -- > Jason A. Tourville, Ph.D. > Research Assistant Professor > Department of Speech, Language, > and Hearing Sciences > Boston University > 677 Beacon St. > Boston, MA 02215 > Phone: (617)353-9484 > Fax: (617)353-7755 > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. -- Jason A. Tourville, Ph.D. Research Assistant Professor Department of Speech, Language, and Hearing Sciences Boston University 677 Beacon St. Boston, MA 02215 Phone: (617)353-9484 Fax: (617)353-7755
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The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
-- Jason A. Tourville, Ph.D. Research Assistant Professor Department of Speech, Language, and Hearing Sciences Boston University 677 Beacon St. Boston, MA 02215 Phone: (617)353-9484 Fax: (617)353-7755