Hi Katherine - I believe that it's because you define bvecfile and bvalfile as lists of 2 file names each. Both bvecfile and bvalfile accept a single file name. In bveclist you can enter as many gradient tables as input volumes.
Best, a.y
On Thu, 17 Dec 2015, Katherine Damme wrote:
Here is all of the output to the terminal.
On Thu, Dec 17, 2015 at 5:12 AM, Anastasia Yendiki ayendiki@nmr.mgh.harvard.edu wrote:
Hi Katherine - I don't see this error in the log file, but the last command that it ran before it stopped was this: mri_probedicom --i/media/Data/Temple/Temple_Tracula/31313422_2998/dti_dicom/31313422_2998.MR. Temple.9.1.20140521.105357.1f9ykdm.dcm > /media/Data/Temple/Temple_Tracula/31313422_2998/dmri/dcminfo.dat
Does this .dat file exist? If so the error probably happened after this command. Can you send the exact error message that you see on your terminal? Thanks! a.y On Tue, 15 Dec 2015, Katherine Damme wrote: > Hello Everyone! > > I am getting a badly formed number error in my trac-all any ideas? > > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.--
Kate Damme | Affective and Clinical Neuroscience Lab | Northwestern University
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