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That is correct! I saved the fixed version of the trac-preproc but the problem still remained. Everything works fine when I run the preprocessing on more than one subject just like you mentioned. Any way to fix this? Thank you for your reply!
Ioannis P.
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On Thu, Jan 20, 2022 at 6:00 AM Yendiki, Anastasia AYENDIKI@mgh.harvard.edu wrote:
Hi Ioannis - Any chance that you're running into this previously reported (and addressed) problem? https://secure-web.cisco.com/14FAyoW83tF041YujgFuIkKvWm2U1SkX38EM1ORa0xOxCbc...
Anastasia.
*From:* freesurfer-bounces@nmr.mgh.harvard.edu < freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of John Pap < mentadexx@gmail.com> *Sent:* Sunday, January 16, 2022 5:40 AM *To:* freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu *Subject:* [Freesurfer] Tracula -prep error: cannot stat dwi_orig_las.1.bvecs
External Email - Use CautionHello to everyone!
I'm trying to run the preprocessing step of tracula to my subject and I keep getting the following error:
mv: cannot stat '/home/ioannis/FFF/KORO/T1_nii/trc/Subj_koro/dmri/dwi_orig_las.1.bvecs': No such file or directory
As a matter of fact this file was never created during the process. My files are in nifti format and I try to reconstruct the corticospinal tracts. I attach my configuration file and the log file. Thanks in advance for your help!
Ioannis P. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/1P9CML8ExidnuK-FItSfKSp2NdEVd1G6N348i0oTDujNAUP... The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at http://secure-web.cisco.com/14OfonVMiIgifL8X0MQt9XWUBTPjads8-PcRSR5fZdxbsuQS... . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.