Look in /media/sf_T1/recon/demo3/surf Does lh.white.preaparc.H exist? If so, does lh.white.H exist? If not, what happens when you run ln -s lh.white.preaparc.H lh.white.H in that folder?
On 8/5/2021 1:41 AM, guang wrote:
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Hello FreeSurfer Developers, I'm attempting to preprocess my nii.gz files with FreeSurfer, But some errors occurred when I recon-all the data. I've attached the batch script and recon-all.log in case it's of any use.
- FreeSurfer version:
freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c 2) Platform: CentOS release 6.10 (Final) 3) uname -a: Linux bogon 2.6.32-754.2.1.el6.x86_64 #1 SMP Fri Jul 13 12:50:12 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux 4) recon-all.log: see attached 5) batch .sh file:see attached
Thank you for any reply.
zhaoguang
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