does that file exist?
LAOUCHEDI MAKHLOUF wrote:
hi doug i am using the v5.0.0 version, the massage i have when running "mri_aparc2aseg --s ctr12 --a2009s" is : ( SUBJECTS_DIR makh_free subject ctr12 outvol makh_free/ctr12/mri/aparc.a2009s+aseg.mgz useribbon 0 baseoffset 10100 RipUnknown 0
Reading lh white surface makh_free/ctr12/surf/lh.white
Reading lh pial surface makh_free/ctr12/surf/lh.pial
Loading lh annotations from makh_free/ctr12/label/lh.aparc.a2009s.annot could not read annot file makh_free/ctr12/label/lh.aparc.a2009s.annot No such file or directory ERROR: MRISreadAnnotation() failed makh_free/ctr12/label/lh.aparc.a2009s.annot)
same thing when using : --annot aparc.a2009s
thanks for your help
--- En date de : *Lun 21.11.11, Douglas N Greve /greve@nmr.mgh.harvard.edu/* a écrit :
De: Douglas N Greve <greve@nmr.mgh.harvard.edu> Objet: Re: [Freesurfer] use of --a2009s flag À: "LAOUCHEDI MAKHLOUF" <laoumakhl@yahoo.fr> Cc: Freesurfer@nmr.mgh.harvard.edu Date: Lundi 21 novembre 2011, 18h18 What version are you using? You can accomplish the same thing with --annot aparc.a2009s doug LAOUCHEDI MAKHLOUF wrote: > hi everyone > > i am trying to use the mri_aparc2aseg command with the > --a2009s flag to have the aparc.a2009s labels and i have the following > message " Option --a2009s unknown" > > thanks > > ------------------------------------------------------------------------ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu </mc/compose?to=Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu </mc/compose?to=greve@nmr.mgh.harvard.edu> Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu </mc/compose?to=Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.