Yes that's from FSL. It's needs to be in $FSLDIR. ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Alan Francis alandarkenergy@gmail.com Sent: Thursday, August 11, 2022 3:30 PM To: Freesurfer freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Tracula - Preproc
External Email - Use Caution
Hi Anastasia, King Wei:
I did as you suggested with the config file and the preprocessing ran for a bit but then an error occurred. I have attached the run script. It says BET not found. Is this the Brain Extraction tool?
Could you please shed some light on this?
thanks so much,
Alan
-- |~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|
Alan N. Francis PhD Assistant Professor of Neuroscience Institute of Neuroscience University of Texas, School of Medicine Rio Grande Valley Texas.