29 Jan
2018
29 Jan
'18
7:14 p.m.
Hello Freesurfer developers,
I’m trying to run a recon-all on ADNI T1 images. Since these data have already been corrected with the N3 correction, I want to turn off N3 correction in the recon-all process so I added -nonuintensitycor after -all. However, when I run it, I get an error during the normalization step since it no nu.mgz file is generated and cannot be found by mri_normalize. I’d like to know how to do the everything except the N3 correction.
1) Freesurfer version: 6.0.0