I've just added something to do this. Add -talxfm fsl-tal.xfm to the cmd line. Live on next dev update.
doug
Bill Monaco wrote:
Hi,
I wanted to know if it's possible to run isxconcat-sess but have it use a different talairach transform when it calls mri_vol2vol. Currently the default is mri/transforms/talairach.xfm, but I want it to use one I had outputted from a previous processing step - mri/transforms/fsl-ta1.xfm
Is there an easy way to do this?
Thanks,
Bill