did all of them fail? That seems unlikely. Our failure rates are usually pretty low (less than a couple of percent). If they are all failing something else is wrong
On Mon, 25 Mar 2019, Chhavi Yadav wrote:
External Email - Use Caution
HI Bruce,Thanks for your email. I actually have 3500 files. So cant do transform on them manually. Any other way? Like downloading the previous version of freesurfer? Chhavi
On Mon, Mar 25, 2019 at 10:56 AM Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: Hi Chhavi
the automated Talairach transform creation can sometimes fail, particularly in the presence of very large ventricles or lots of damaged white matter or both. We have a tutorial on checking and correcting it here:https://urldefense.proofpoint.com/v2/url?u=https-3A__surfer.nmr.mgh.harvard.... ach-5Ffreeview&d=DwIDaQ&c=slrrB7dE8n7gBJbeO0g-IQ&r=N9tx5lNt4OZx_Y6zKcYlyQ&m=jmk4B1izuOm3OQVTtDKbHktL7QrJ JELPuLToS-_5lkY&s=LpBDOkEFGzHx0owj2xszaOGP5m2RG6gsMN9vq30fOBU&e=
cheers Bruce On Mon, 25 Mar 2019, Chhavi Yadav wrote: > > External Email - Use Caution > > Hi,I am a beginner to freesurfer. Never used it before. > Currently I am working on some dicoms from ADNI that I want to preprocess. > But I am getting this 'talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** ' error. > I am attaching the error log and other files for your reference. Please help me out. > > Regards, > Chhavi > >_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.eduhttps://urldefense.proofpoint.com/v2/url?u=https-3A__mail.nmr.mgh.harvard.ed... r&d=DwICAg&c=slrrB7dE8n7gBJbeO0g-IQ&r=N9tx5lNt4OZx_Y6zKcYlyQ&m=jmk4B1izuOm3OQVTtDKbHktL7QrJJELPuLToS-_5l kY&s=bKPWvTI6mhmqTDXPcjuZiBrd9LczeJVcqb47rKN8Lvg&e=