22 Apr
2009
22 Apr
'09
5:20 a.m.
Hello freesurfers,
I am running a reconstruction of a macaque in stabe4, and I am having a problem with the smooth white matter surface not following the wm boundary in the wm.mgz volume (please see attached for examples in the wm and T1 volumes).
The non-wm area included in the surface was never part of the wm volume, but I edited the other defects in wm.mgz and re-ran fill, tessellate, smooth1, inflate1, qsphere, fix, finalsurfs, smooth2, amd inflate2. Unsurprisingly, this problem persisted.
Is there anything that I can do to fix this?
Thanks! Katie