mri_vol2surf should work to resample the mask to the surface. Make sure to use nearest neighbor. Making it an actual label is a little bit trickier, however, you can create an annotation with mris_seg2annot
doug
Bruce Fischl wrote:
Hi Morgan,
what format is your volume ROI in? I think Doug's mri_vol2surf will do this. If you have it in our label format file, then just loading it into tksurfer will work if all the vertex #s are -1 (it will sample it onto the surface)
Bruce On Thu, 24 May 2007, Morgan Hough wrote:
I was wondering if I can make a cortical label from a volume ROI from the commandline. I would like to extract thickness values from a region defined in each subject's volume space. Thanks in advance.
Cheers,
-Morgan _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer