hello Freesurfer developers,
during the recon-all (autorecon1) processing, it seems that the mne_nu_correct procedure does not always manage to finish successfully. I have searched the net, found a question in the mailing list, which seemed to be similar, but no answer (http://www.bic.mni.mcgill.ca/pipermail/minc-users/2015-November/004205.html).
Our status file shows, that we had sometimes runs which were completed without errors. Maybe, we should not have started the recon-all a second time. It would be very great if you could help with further hints. For instance, could we remove a file or several files to roll back to the situation when it worked?
all the best, Burkhard
.....................
FREESURFER_VERSION: freesurfer-x86_64-unknown-linux-gnu-stable5-20130513 Platform: ubuntu 16.04 (xfce)
uname -a
Linux ren 4.4.0-38-generic #57-Ubuntu SMP Tue Sep 6 15:42:33 UTC 2016 x86_64 x86_64 x86_64 GNU/Linux
Command: freesurfer=5.3.0_maess@ren:/scr/eber2/intstats > recon-all -autorecon1 -nuintensitycor-3T -subjid is09
-- Dr. Burkhard Maess Max Planck Institute for Human Cognitive and Brain Sciences Stephanstr. 1a, P.O. Box 500355, D-04303 Leipzig Aussenstelle Bennewitz, phone/fax: +49(3425)8875-2526/-2511 mail: maess 'at' cbs.mpg.de, http://www.cbs.mpg.de