Thanks Bruce. I see that because these are not Siemens scans I need to use the command dcmunpack instead of unpacksdcmdir, however, if the DICOM files are already saved on our cluster do the files need to be unpacked or simply converted to COR format using mri_convert? Thanks!
Best, Alex
Hi Alex The dicoms should be enough Bruce
On Aug 16, 2012, at 4:10 PM, "Alexandra Tanner" atanner@nmr.mgh.harvard.edu wrote:
Dear Doug,
We're getting T1 DICOM files from the Clinical PACS System (via mi2b2) and would like to pull them info the freesurfer stream to get cortical thickness. In order to run the standard unpacking commands, do we need any other files besides the DICOM files themselves? Of note, these scans were acquired on a variety of clinical scanners at MGH. Any suggestions you have would be greatly appreciated!
Thanks, Alex _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer