Hi Lisa
globus pallidus is included in the aseg, have you looked at it? The others you could lab on the fsaverage volume and warp to individual subjects if you want, but that won't be as accurate as including them in our atlas (but a lot easier!). We are working on segmenting things like medulla and pons, but it's not ready for prime-time yet.
cheers Bruce
On Thu, 5 Sep 2013, Luo,Yishan wrote:
Hello, I have run recon-all for my subject, if I want to get more subcortical segmentation, e.g., globus pallidus, medulla, pons and so on, how can I do? Can I manually draw these region on the bert image and transfer them to individual subject, like mri_label2label?
Thanks.
Lisa