External Email - Use Caution
Thank you for the prompt answer! *Daniel Callow* *PhD Student, Neuroscience and Cognitive Science* Exercise for Brain Health Lab University of Maryland, College Park *ddcc2442@gmail.com ddcc2442@gmail.com* 443-254-6298
On Tue, Jul 30, 2019 at 9:18 AM Iglesias Gonzalez, Eugenio < e.iglesias@ucl.ac.uk> wrote:
External Email - Use CautionDear Daniel,
Such a script doesn’t exist yet (it’s in the to-do list). The reason why it’s not a straightforward extension of segmentHA_T1.sh is that resampling the anisotropic T2s to a common space is not a good idea, given the differences in orientation. There are ways of getting around this problem; I just haven’t found the time to do it, yet…
Cheers,
/Eugenio
--
Juan Eugenio Iglesias
Senior research fellow
CMIC (UCL), MGH (HMS) and CSAIL (MIT)
*From: *freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Daniel Callow ddcc2442@gmail.com *Reply-To: *Freesurfer support list freesurfer@nmr.mgh.harvard.edu *Date: *Monday, 29 July 2019 at 21:48 *To: *Freesurfer support list freesurfer@nmr.mgh.harvard.edu *Subject: *[Freesurfer] segmentHA_T2.sh longitudinal version?
External Email - Use Caution *Hello,
I have recently used segmentHA_T1_long.sh and was pleased with the segmentation results. However, I now have a longitudinal data set that has additional T2 high-resolution scans of the hippocampus as well as T1's. I know there is a segmentHA_T2.sh script to incorporate these types of scans. However, there doesn't seem to be a longitudinal version for this. Is this something that is being worked on? Or is there another reason that T2 should not be used with longitudinal analysis?
Thank you for any advice you can provide,
*Daniel Callow*
*PhD Student, Neuroscience and Cognitive Science*
Exercise for Brain Health Lab
University of Maryland, College Park
*ddcc2442@gmail.com ddcc2442@gmail.com*
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