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Hello freesurfer,
I am having a difficult time organizing my command to apply the Pial edits that I have made to my .longs. The bases came out just fine but the .longs needed Pial editing. Here is what I have tried but I still get errors.
recon-all -long C002d C002d.long.C002.base -mprage -3T -norm2-b 20 -norm2-n 5 -autorecon2 -autorecon3
C002d is the cross-sectional. I also tried putting the base in this position as well and it still created an error.
I am unsure of how what the command is and have read through: https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/LongitudinalTutorial https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/LongitudinalTutorial https://surfer.nmr.mgh.harvard.edu/fswiki/LongitudinalEdits https://surfer.nmr.mgh.harvard.edu/fswiki/LongitudinalEdits
Still no luck on how to properly organize this command.
Any help or guidance would be greatly appreciated,
-Sierra Jarvis