is the header file named /birc/jemlab/anat_lauren/fa+orig.HEAD? If so, do you have permission to read it? On Thu, 19 Jun 2008, Lauren Ethridge wrote:
Hi, I'm relatively new to freesurfer, just learned about it at the Multi-modal course this year, and I'm trying to apply it to some of our own functional data. This may be a bit of a simple question, but here goes. I've tried to use mri_convert to change a brik file to nifti but I get the following error:
[quackers@matlab anat_lauren]$ mri_convert fa+orig.BRIK fa.nii mri_convert fa+orig.BRIK fa.nii $Id: mri_convert.c,v 1.146.2.2 2008/03/02 02:53:20 nicks Exp $ reading from fa+orig.BRIK... afniRead(): error opening file /birc/jemlab/anat_lauren/fa+orig.HEAD [quackers@matlab anat_lauren]$
The header file is located in the same folder as the brik file. Is there something I need to do to the header file in order to make it readable to fsfast?
I've also tried using unpacksdcmdir to unpack the raw dicom files, but the data came from a GE scanner so it doesn't seem to recognize them.
Any help would be much appreciated.
Lauren
Lauren Ethridge Graduate Student - Neuroscience Franklin Foundation Fellow Biomedical and Health Sciences Institute University of Georgia 706-542-3128 _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer