Hi Markus,
This bug has been fixedhttps://github.com/freesurfer/freesurfer/commit/ca8ad3faab3a0a2f5e64b22c81232421fe2e53f2 in the dev branch of Freesurfer (FS). You can get the changes in your local copy of FS by either git checkout the mri_sclimbic_seg/mri_sclimbic_seg file into the appropriate subfolder (<FS_install_dir>/python/scripts/mri_sclimbic_seg) where you installed FS or you could simply edit the mri_sclimbic_seg file at that location as in the bug fixhttps://github.com/freesurfer/freesurfer/commit/ca8ad3faab3a0a2f5e64b22c81232421fe2e53f2.
Best, Avnish ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Markus Handal Sneve m.h.sneve@psykologi.uio.no Sent: Wednesday, September 21, 2022 5:17 PM To: Freesurfer@nmr.mgh.harvard.edu Freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] mri_sclimbic_seg: --conform not conforming?
External Email - Use Caution
Hi,
I’m testing mri_sclimbic_seg in the new FS version (7.3.2). My structurals are 0.8mm isotropic, so I’m adding the —conform flag, but still get this error:
[cid:6758653C-0371-4C06-8D50-100648474ED0]
Any ideas? And, BTW, I had to set the environmental variable HDF_USE_FILE_LOCKING to FALSE to get the tool running. Perhaps a tip to add to the wiki, if not people can now see it here.
Thanks for your great work! Cheers, Markus
Markus Handal Sneve, Ph.D. Center for Lifespan Changes in Brain and Cognition Department of Psychology University of Oslo
