Dear Paul,
maybe this is implicit, but to assure:
you have also to include -autorecon3.
Therefore the full command is:
recon-all -s subject_id -autorecon2-cp -autorecon3 -T2pial
Antonin
Yes, I think so
On Feb 5, 2017, at 2:47 PM, miracoo...@gmail.com wrote:
Hello, I ran the entire recon pipeline with T2 option and then added control points. Do I need to run recon-all -autorecon2-cp with T2 flag to redo the pial surface or not? Thanks. Paul