18 Apr
2016
18 Apr
'16
10:30 a.m.
Hi,
I recently edited a brain with a gyral cyst, carefully filling the cyst with white matter in the wm.mgz. Unfortunately after running: /usr/local/freesurfer/stable5_3_0/bin/recon-all -autorecon2-wm -autorecon3 -subjid nmr01002 -FLAIRpial -openmp 8
none of the edits were incorporated.
Is the FLAIRpial flag incompatible with autorecon2-wm?
Is there some other misake?
I followed this guide https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/WhiteMatterEdits_freevi...
Thanks, Dan