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Hello FreeSurfer users,
I am using FreeSurfer version 6 with the latest dev version of freeview on a Linux machine. When I load a surface into freeview with a color scale, I notice the scale does not correlate with the values in the surface. The min and max values are always some small number (e.g. 3.0 x 10^-6). This happens even if I set the threshold in the command line. To fix it, I would need to configure the surface and click “apply”. In the past, the color scale would format itself correctly without me having to go through that configure step.
Example command line: freeview -f fsaverage/surf/ph.pial:overlay=lh.thickness.betas:overlay_threshold=0,0.05:overlay_method=linear -colorscale -ss lh.lateral.thickness.beta.tiff
Thanks in advance,
Ryan Nillo