hi Martin, I just tried this and it resulted in errors/ Do I not have to specify a flag for the baseid or for each subject, eg -s?
What I did (according to your suggestion)
recon-all -long XXX_1.long XXX_2.long -localGI
This did not work? Do you know why potentially?
On Wed, Mar 26, 2014 at 3:28 PM, Martin Reuter mreuter@nmr.mgh.harvard.edu wrote:
Hi Anna,
no, you would still do:
recon-all -long tpid baseid -localGI
just not use the '-all'.
Best, Martin
On 03/26/2014 11:12 AM, Anna Jonsson wrote:
thank you. But if the lnog process has already been done and these induviduals already have long directories so to speak, I would just put the lgi flag on as normal but just replace the subject name with the long subject name eg ?
recon-all -s XXXX_long -localGI
Thank you
On Sat, Mar 15, 2014 at 2:07 PM, Martin Reuter < mreuter@nmr.mgh.harvard.edu> wrote:
Hi Anna,
for the image processing, you just add the lgi flag to the regular longitudinal recon-all command recon-all -long …… -lgi
for the analysis after that you use the long directories.
Best, Martin
On Mar 15, 2014, at 10:04 AM, Anna Jonsson ajonsson09@gmail.com wrote:
Dear group,If I want conduct gyrification analyses on the long runs that have been through the longitudinal stream, do I just perform the "normal" baseline command on the .long data?
thank you,
kind wishes
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