11 Sep
2014
11 Sep
'14
10:45 a.m.
See http://surfer.nmr.mgh.harvard.edu/fswiki/FsAnat-to-NativeAnat
On 09/11/2014 05:12 AM, Gabor Perlaki wrote:
Dear all,
I'd like to convert the aparc+aseg.mgz to nifti and use it in the space of the original MR image. The basic conversion from mgz to nifti works fine "mri_convert aparc+aseg.mgz aparc+aseg.nii". However if I reslice it in the space of the original MRI than something fails and even negative intensities are presented in the converted aparc+aseg2raw.nii file " mri_convert -rl rawavg.mgz -rt nearest aparc+aseg.mgz aseg+aparc2raw.nii". Any idea how to convert it?
Best Regards, Gabor
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/