Hi Sara, I don't know what FSL expects in terms of surfaces. Maybe posting to the FSL list would be better?
doug
On 10/04/2016 06:40 PM, saraizad@alumni.ubc.ca wrote:
Hi Freesurfer team,
I am trying to use Freesurfer surfaces to do tractography in FSL. I extracted two ROIs, one of which is the output of the following command:/label2surf –s lh.white.gii –o lh.prefrontal.gii –l lh.prefrontal.txt// /and the other is the output of:/mri_tessellate aseg.mgz 46 rh.cerebellum.wm/
My question is how to convert these files to fsl-compatible surfaces usable for tractography
If I have to use surf2surf, I am not clear on how to do it. Should I change both the type and the convention of the images.
Thanks a lot, Sara
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