External Email - Use Caution
Hi Alan,
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As Anastasia said, bet is part of FSL.
If you don’t have it installed already, you need to install FSL.
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Best,
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King-Wai
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From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Yendiki, Anastasia Sent: Thursday, August 11, 2022 3:42 PM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Tracula - Preproc
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Yes that's from FSL. It's needs to be in $FSLDIR.
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From: freesurfer-bounces@nmr.mgh.harvard.edu mailto:freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu mailto:freesurfer-bounces@nmr.mgh.harvard.edu > on behalf of Alan Francis <alandarkenergy@gmail.com mailto:alandarkenergy@gmail.com > Sent: Thursday, August 11, 2022 3:30 PM To: Freesurfer <freesurfer@nmr.mgh.harvard.edu mailto:freesurfer@nmr.mgh.harvard.edu > Subject: [Freesurfer] Tracula - Preproc
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� � � � � � � �External Email - Use Caution � � � � � � � �
Hi Anastasia, King Wei:
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I did as you suggested with the config file and the preprocessing ran for a bit but then an error occurred. I have attached the run script. It says BET not found. Is this the Brain Extraction tool?
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Could you please shed some light on this?
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thanks so much,
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Alan