Re: [Freesurfer] mri_cvs_register failure from missing shared lib

Hi Corinna,

Its been awhile since Ive used Ubuntu12.04. Infact its End of Life date is 3 days away ;)

Can you please send me the command and the log file which gives the exact error. Thanks.

-Zeke

On 04/25/2017 01:49 PM, Corinna Bauer wrote:

Hi Zeke,

I am also having this same problem. Even after completing the steps you listed above. I am running Ubuntu 12.04.

Any suggetions?

Thanks

On Wed, May 28, 2014 at 1:50 PM, Z K <zkaufman@nmr.mgh.harvard.edu mailto:zkaufman@nmr.mgh.harvard.edu> wrote:

You will need to install libboost v1.41 onto your system. You should be
able to install it using yum:

$>yum install boost-devel

However, its possible that the version you get thru this method may be
incompatible with the version required by freesurfer. If the above does
not fix your issue, then download libboost
(http://www.boost.org/users/history/version_1_41_0.html
<http://www.boost.org/users/history/version_1_41_0.html>) and untar
it. Then:

 >cd libboost_folder
 >mkdir libraries
 >./bootstrap.sh --prefix=./libraries
 >./bjam install
 >cd libraries/lib
 > ln -s libboost_program_options.so.1.41.0
libboost_program_options.so.5
 >export
LD_LIBRARY_PATH=.../boost_temp/boost_1_41_0/libraries/lib:$LD_LIBRARY_PATH

Hope this helps and feel free to contact me if your having issues
getting it to work.

-Zeke

On 05/28/2014 12:17 PM, Michael Waskom wrote:
> Hi, I had mri_cvs_register die on me when it couldn't find a shared
> library. Relevant bit is (full log is attached):
>
> mris_resample: error while loading shared libraries:
> libboost_program_options.so.5: cannot open shared object file: No such
> file or directory
>
> Freesurfer bugr info:
>
> --------------------
>
> FREESURFER_HOME: /hsgs/software/freesurfer/5.3.0
>
> Build stamp: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0
>
> RedHat release: Red Hat Enterprise Linux Server release 6.3 (Santiago)
>
> Kernel info: Linux 2.6.32-358.6.2.el6.x86_64 x86_64
>
> ----------------------
>
> Any thoughts on how to proceed? Thanks!
>
> Michael
>
>
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