Hi Martijn, autorecon-cp is correct, we start the process a bit earlier now. But even better, regardless of what edits you make, you can rerun with "recon-all -make all" and it will start at the earliest needed step. (Although running from autorecon2 after the skullstrip fix is correct as well). Allison
On Mar 2, 2012, at 6:11 AM, Martijn Steenwijk martijnsteenwijk@gmail.com wrote:
Dear all,
On http://surfer.nmr.mgh.harvard.edu/fswiki/RecommendedReconstruction it is indicated that -autorecon-cp should be added if control points are added. Shouldn't this be -autorecon2-cp?
Furthermore, suppose control points are added and -autorecon2-cp has been runned. If I then correct the skull strip (as indicated in the wiki) and want to rerun, do I have to call -autorecon2-cp then, or can I just run -autorecon2 -autorecon3?
Best, Martijn _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer