Dear FreeSurfer experts,
I have a question regarding the Monte Carlo correction. To create a Monte Carlo correction for my specific sample (4year old kids) the wiki suggests this command: mri_mcsim --o $FREESURFER_HOME/average/mult-comp-cor/yoursubject/lh/cortex --base mc-z --surface yoursubject lh --nreps 10000
I have run this command, however I get an error message that I have no rights to write into the $FREESURFER_HOME directory. I work at an institute where that directory is stored on a server to which many people have access but no writing rights (which is definitely a good thing), so getting the rights is not really an option. I was wondering now whether I could just specify a different directory or whether it absolutely has to be the $FREESURFER_HOME directory? If the latter is the case, would you suggest I install a local copy or do you have any other suggestions?
Thanks in advance! Clara