It says "no such file or directory". Does it exist?
doug
Jürgen Hänggi wrote:
Dear FS experts
I tried to run mri_surf2surf on parcellations produced by mris_divide_parcellation but there is the following problem:
[Juergen-Haenggis-Mac-Pro:/Applications/freesurfer/subjects] juergenhaenggi% mri_surf2surf --srcsubject fsaverage_divide_parc --sval-annot /Application/freesurfer/subjects/fsaverage_divide_parc/label/lh.divide100.an not --trgsubject GCS_con_01 --tval lh.divide100.annot --hemi lh Setting mapmethod to nnf srcsubject = fsaverage_divide_parc srcval = (null) srctype = trgsubject = GCS_con_01 trgval = lh.divide100.annot trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) Reading source surface reg /Applications/freesurfer/subjects/fsaverage_divide_parc/surf/lh.sphere.reg Loading source data Reading surface file /Applications/freesurfer/subjects/fsaverage_divide_parc/surf/lh.orig reading group avg surface area 750 cm^2 from file Reading in average area /Applications/freesurfer/subjects/fsaverage_divide_parc/surf/lh.orig.avg.are a.mgh could not read annot file /Application/freesurfer/subjects/fsaverage_divide_parc/label/lh.divide100.an not No such file or directory [Juergen-Haenggis-Mac-Pro:/Applications/freesurfer/subjects] juergenhaenggi%
When I load the annotation with tksurfer, everthying looks fine.
I run the following command to produce the annot file
mris_divide_parcellation fsaverage_divide_parc lh aparc.a2005s.annot 100 lh.divide_100
Any idea why mri_surf2surf does not read this parcellation. The annot file was too big to attach.
Thanks in advance Regards Jürgen
Jürgen Hänggi, Ph.D. Division Neuropsychology Institute of Psychology University of Zurich Binzmuehlestrasse 14, PO Box 25 8050 Zurich, Switzerland 0041 44 635 73 97 (phone office) 0041 76 445 86 84 (phone mobile) 0041 44 635 74 09 (fax office) BIN 4.D.04 (office room number) j.haenggi[at]psychologie.uzh.ch (email) http://www.psychologie.uzh.ch/neuropsy/ (website) http://www.juergenhaenggi.ch (private website)
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