Getting errors on a fresh install of 3.0.3 Tiger release. Any suggestions appreciated. If any more info is needed/would help just let me know.
Command:
mri_convert <input> <output>
Error:
dyld: mri_convert Undefined symbols: mri_convert undefined reference to ___stderrp expected to be defined in /usr/lib/libSystem.B.dylib mri_convert undefined reference to ___stdoutp expected to be defined in /usr/lib/libSystem.B.dylib Trace/BPT trap
(Error is reproducible using any Freesurfer utility as far as I can tell)
Current working environment var $DYLD_LIBRARY_PATH :
echo $DYLD_LIBRARY_PATH $FREESURFER_HOME/lib/misc/lib:$FREESURFER_HOME/lib/tcltktixblt/lib: $FREESURFER_HOME/lib/gsl/lib:$FREESURFER_HOME/freesurfer/lib/
(replaced absolute path with the $FREESURFER_HOME var.)
GDB backtrace output:
run subjects/bert/mri/T1.mgz test.img Starting program: $FREESURFER_HOME/bin/mri_convert subjects/bert/mri/ T1.mgz test.img Reading symbols for shared libraries ++.. done dyld: $FREESURFER_HOME/bin/mri_convert Undefined symbols: $FREESURFER_HOME/bin/mri_convert undefined reference to ___stderrp expected to be defined in /usr/lib/libSystem.B.dylib $FREESURFER_HOME/bin/mri_convert undefined reference to ___stdoutp expected to be defined in /usr/lib/libSystem.B.dylib Program received signal SIGTRAP, Trace/breakpoint trap. 0x8fe01400 in __dyld_halt () (gdb) backtrace full #0 0x8fe01400 in __dyld_halt () No symbol table info available. #1 0x8fe0a2b0 in __dyld_check_and_report_undefineds () No symbol table info available. #2 0x8fe113b0 in __dyld_link_in_need_modules () No symbol table info available. #3 0x8fe0166c in __dyld__dyld_init () No symbol table info available.