nope, keep waiting. Depending on your hardware and how different the anatomy is from normal it can take up to a day.
as for LGI, check recon-all -help cheers Bruce On Sun, 24 Jan 2016, Ankita Chatterjee wrote:
I ran the command recon-all -all -s t2 -i t1xxxxx.mnc as Bruce suggested and the process took off but has been running for more than 6 hours and seems to be not doing anything after the step which reads MRISunfold() max_passes = 1 -----------it has a few steps after that, but doesn't say that it completed. The last line reads - randomSeed 1234. Is it hung? Should I exit the program?
Thank you for your help! Ankita