You need to find the correct CDF file, eg, if the final FWHM is 12, it would be in $FREESURFER_HOME/average/mult-comp-cor/fsaverage/lh/cortex/fwhm12/abs/th30/mc-z.cdf
To get the FWHM look in glmdir/fwhm.dat and round down in the mc-z.cdf file, find the row where the MaxClustCDF drops below .05/2=.025, then look at the MaxClustBin for the critical cluster size
On 2/24/2020 6:49 AM, Elisa Castaldi wrote:
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Dear experts,
To perform a Monte Carlo based cluster correction, I have run the following line:
mri_glmfit-sim --glmdir glmdir --mczsim 3 abs --cwp 0.05 --2spaces --a2009s
I need to figure out which is the minimum number of voxels required for a cluster to be considered significant. In other words, which is the cluster _size_ threshold in this case? Where can I find this information?
Thanks Elisa
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