Hi Reza,
On Apr 20, 2014, at 14:58 , Reza Rajimehr reza@nmr.mgh.harvard.edu wrote:
I have done a functional analysis for some contrasts using selxavg3-sess. In the contrast folders, I have added some files. Now I want to do the same analysis for some new contrasts. My guess is that selxavg3-sess computes all the contrasts again, and I am worried that the new folders overwrite the previous ones and I lose the files that I have manually added. If this is the case, is there a way to run selxavg3-sess for some specified contrasts?
From selxavg3-sess --help:
Optional Arguments:
-overwrite : delete analysis if session of already analyzed -contrasts-only : only compute contrasts (estimation already done) <-co> -c c1 <-c c2 ...> : compute contrasts c1, c2, ... (default is to compute all) -no-con-ok : run even if no contrasts in analysis -fwhm : compute FWHM of residual
so maybe adding: -contrasts-only and -c my_contrast will do the trick? I assume you already created my_contrast before. This used to work for FS3.5 and 4.5 if I recall correctly.
Best Regards sebastian
Thanks, Reza _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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