Dear experts,
To complete my error, I've got moreover another error in "dmri.bedpostX/logs" for each slice :
*** ERROR (nifti_image_read): failed to find header file for '/home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/data_slice_0000'* *** ERROR: nifti_image_open(/home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/data_slice_0000): bad header info* *Error: failed to open file /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/data_slice_0000* *ERROR: Could not open image /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/data_slice_0000* *Image Exception : #22 :: Failed to read volume /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/data_slice_0000*
*An exception has been thrown* *Failed to read volume /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri/data_slice_0000Trace: read_volume4DROI.*
Thanks for helping !
Matthieu
2013/12/12 Matthieu Vanhoutte matthieuvanhoutte@gmail.com
Hello experts,
I am running the ball-and-stick model fit in Tracula on FS 5.1 and come across the error:
*WARN: Running FSL's bedbost locally - this might take a while WARN: It is recommended to run this step on a cluster bedpostx_seychelles /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri subjectdir is /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri Making bedpostx directory structure Queuing preprocessing stages /home/global//freesurfer5.1//bin/fsl_sub_seychelles: 216: [: SGE: unexpected operator /home/global//freesurfer5.1//bin/fsl_sub_seychelles: 263: [: SGE: unexpected operator /home/global//freesurfer5.1//bin/fsl_sub_seychelles: 321: [: xbedpostx_pre: unexpected operator /home/global//freesurfer5.1//bin/fsl_sub_seychelles: 351: [: x: unexpected operator Queuing parallel processing stage /home/global//freesurfer5.1//bin/fsl_sub_seychelles: 216: [: SGE: unexpected operator /home/global//freesurfer5.1//bin/fsl_sub_seychelles: 321: [: xbedpostx: unexpected operator /home/global//freesurfer5.1//bin/fsl_sub_seychelles: 351: [: x66: unexpected operator Queuing post processing stage /home/global//freesurfer5.1//bin/fsl_sub_seychelles: 216: [: SGE: unexpected operator /home/global//freesurfer5.1//bin/fsl_sub_seychelles: 263: [: SGE: unexpected operator /home/global//freesurfer5.1//bin/fsl_sub_seychelles: 321: [: xbedpostx_post: unexpected operator /home/global//freesurfer5.1//bin/fsl_sub_seychelles: 351: [: x: unexpected operator
Type /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri.bedpostX/monitor to show progress. Type /home/matthieu/NAS/matthieu/DTI_Alex/AR28/dmri.bedpostX/cancel to terminate all the queued tasks.
You will get an email at the end of the post-processing stage.
I have attached my dmrirc file and trac-all.log.
Best regards,
Matthieu