Dear Bruce,
the loss of information about the source and target geometry is not tolerable.
I found similar request (https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2017-February/049834....). There is an matlab script, which is able to read the .m3z files. Lilla Zollei replied the script. Maybe there also is a python-version available.
Yours sincerely and many thanks,
Daniel van de Velden
On 06.11.2017 15:44, Bruce Fischl wrote:
Hi Daniel
I don't know if there is a python converter, but you can do:
mri_convert file.m3z file.mgz
or
mri_convert file.m3z file.nii.gz
and it will convert it to a 3-frame volume with the dense vector field. You lose information that way though about source and target geometry and such
cheers Bruce
On Mon, 6 Nov 2017, Daniel van de Velden wrote:
Dear FreeSurfer,
I am trying to visualize and compare multiple subjects from the mri_cvs_registration. Therefore I need to work with the .m3z file. Is there a way to read this file format in python or is there a way to convert it into an other file format ?
There are just a few information on the website describing the file format.
Yours sincerely and many thanks in advance,
Daniel van de Velden
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