Howdy -
It seems that the skullstripping step is having some trouble removing bone marrow (see attached image).
Adjusting watershed values (I've tried as low as 5) does not make any significant improvement.
Does anyone else have this issue? Can anyone provide any hints as to how I might get a better automated skull-strip? I've been manually removing the marrow but it's getting real old.
Any thoughts would be much appreciated.
Bo