Re: [Freesurfer] measuring cortical thickness using FreeSurfer

recon-all \ -i <one slice in the anatomical dicom series> \ -s <subject id that you make up> \ -sd <directory to put the subject folder in> \ -all

cheers Bruce

On Tue, 5 Jul 2011, John Drozd wrote:

Hi,

I am running freesurfer on 64 bit Fedora 10 linux. I am using version:  freesurfer-Linux-centos4_x86_64-stable-pub-v4.3.0. Can anyone point me to a reference web page listing what steps I need to type to process a series of MRI dicom slices and use FreeSurfer to measure cortical thickness for this dicom series?

Thank you, John

-- John Drozd Post-Doctoral Fellow, Robarts Research Institute The University of Western Ontario London, ON, Canada http://publish.uwo.ca/~jdrozd2/index.htm